## All parameters passed to render this file:
## proj_dir: /scratch/devel/pnieto/projects/CSF/data/CSF_01
## proj_name: CSF_01
## library: 4839
## data_dir: /scratch/devel/pnieto/projects/CSF/data/CSF_01/output/01_QC_filtering
## out_dir: /scratch/devel/pnieto/projects/CSF/data/CSF_01/output/02_processing_clustering
We will select resolution 0.1
Recheck quality of clusters
CD45 expression (immune cells)
Explore the TCR and BCR repertoires captured (if available).
## [1] "Percentage of T cells that have a TCR (TRUE) and don't have one (FALSE)."
## [1] "Percentage of B cells that have a BCR (TRUE) and don't have one (FALSE)."