## All parameters passed to render this file:
## proj_dir: /scratch/devel/pnieto/projects/CSF/data/CSF_01 
## proj_name: CSF_01 
## library: 4839 
## data_dir: /scratch/devel/pnieto/projects/CSF/data/CSF_01/output/01_QC_filtering 
## out_dir: /scratch/devel/pnieto/projects/CSF/data/CSF_01/output/02_processing_clustering

Clustering

We will select resolution 0.1

Recheck quality of clusters

CD45 expression (immune cells)

Known marker genes

Preliminary annotation

Top markers

Cell composition

TCR/BCR

Explore the TCR and BCR repertoires captured (if available).

## [1] "Percentage of T cells that have a TCR (TRUE) and don't have one (FALSE)."
## [1] "Percentage of B cells that have a BCR (TRUE) and don't have one (FALSE)."

Back to top